sc_reconstruction.metrics.compute_perturbational_metrics#

sc_reconstruction.metrics.compute_perturbational_metrics(adata_pred, adata_pert_true, adata_ctrl, *, k=20, use_rep=None)[source]#

Run perturbational metrics (currently KNN purity).

Parameters:

  • adata_pred (anndata.AnnData)

  • adata_pert_true (anndata.AnnData)

  • adata_ctrl (anndata.AnnData)

  • k (int)

  • use_rep (str | None)

Return type:

dict[str, float]