metrics#
The metrics module scores a (true, reconstructed) AnnData pair across
three metric families (statistical, biological, perturbational), aggregates
per-method via the rank-percentile, and renders the Fig 3 funky map.
One-call wrappers and aggregation#
- sc_reconstruction.metrics.compute_all_metrics
- sc_reconstruction.metrics.compute_statistical_metrics
- sc_reconstruction.metrics.compute_biological_metrics
- sc_reconstruction.metrics.compute_perturbational_metrics
- sc_reconstruction.metrics.aggregate_rank_percentile
- sc_reconstruction.metrics.funky_heatmap
- sc_reconstruction.metrics.HIGHER_IS_BETTER
Individual metrics#
- sc_reconstruction.metrics.metric_r2
- sc_reconstruction.metrics.metric_mse
- sc_reconstruction.metrics.metric_energy_distance
- sc_reconstruction.metrics.metric_cellcycle
- sc_reconstruction.metrics.metric_pathway
- sc_reconstruction.metrics.metric_coexpression
- sc_reconstruction.metrics.metric_deg
- sc_reconstruction.metrics.metric_cytokine
- sc_reconstruction.metrics.metric_knn_purity